רשימת מאמרים: סמינר 2 , סמסטר א' , תשס"ה

 

 

ספרים

Gusfield, D., Algorithms on strings, trees and sequences, Cambridge university press, 1997

Semple, C. and Steel, M., Phylogenetics, Oxford lecture series in mathematics, 2003

Felsenstein, J., Inferring Phylogenies, Sinauer Associates, 2004

 

      

רשימה (לא סופית) של מאמרים\פרקים,

Phylogenetic trees

 

  1. S.  Sattath and A. Tversky, Additive Similarity Trees, Psychometrika vol. 42 no. 3 (1977). 

  2. K. Atteson, The Performance of Neighbor Joining Methods of Phylogenetic Reconstructions, Algorithmica, vol. 25 no. 2-3,  pp 251-278, 1999

  3.    P. Buneman, The Recovery of Trees From Measures of Dissimilarity , Mathematics in archeological and historical sciences. pp. 387-395 (1971)

  4. D. Bryant, The selection criterion of neighbor joining is unique (2004)

  5. Charleston,M. ,Hendy,M., and Penny,D., Neighbor-joining uses the optimal weight for net divergence. Mol. Phyl. Evol. 2 (1): 6–12, (1993)  

  6. M. Farach, S. Kannan and T. Warnow, A robust model for finding optimal evolutionary trees.

  7. Day, W.H.E., computational complexity of inferring phylogenies from dissimilarity matrices, Bull. Math. Biology 49, pp 461-467, 1987.

  8. R. Agarwala, V. Bafna, M. Farach, M. Paterson and M. Thorup, On the approximability of numerical taxonomy, SIAM J. of Computing 28(3), pp 1073-1085, 1999

  9. M. Krivanek, the complexity of ultrametric partitions on graphs, Information Processing Letters 27, pp. 265-270 (1988)

  10. JC Culberson and P Rudnicki, A fast algorithm for constructing trees from distance matrices, Information Processing Letters 30, pp. 215-220 (1989)

  11. S. Moran and S. Snir, Convex recoloring of strings and trees: definitions, hardness results and algorithms, CS Technical Reprt, Technion, September 2004.

  12. Felsenstein, J., Evolutionary trees from DNA sequences: A Maximum Likelyhood aproach, Journal of molecular evolution 17, pp. 368-376 (1981) & Felsenstein Book, Chapter 9.

  13. Felsenstein, J., Cases in which parsimony or compatability methods will be positively misleading Syst. Zool. 27 pp. 401-410 (1978)

  14. M. Steel, S.L. Szekely, Peter Erdos., The number of nucleotide sites needed to accurately reconstruct large evolutionary trees, DIMACS TR 96-19 (1996)