bioinformatics & computational biology

 combinatorial pattern matching

 optimization algorithms

 algorithm and graph theory

Publications:

  A. Lozano, R.Y. Pinter, O. Rokhlenko, G. Valiente, and M. Ziv-Ukelson: "Seeded Tree Alignment and Planar Tanglegram Layout"; Proceedings of the 7th Workshop on Algorithms in Bioinformatics (WABI), Lecture Notes in Computer Science (LNCS), (to appear).

 O. Rokhlenko, Y. Wexler and Z. Yakhini: "Similarities and differences of gene expression in yeast stress conditions"; Bioinformatics 2007 23(2):184-190.

  Y. Wexler and O. Rokhlenko: "Prisoner's dilemma posed by Fitness-Associated Recombination Strategies"; Journal of Theoretical Biology, in press.

 Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, and Ron Y. Pinter: "Flux Based vs. Topology Based Similarity of Metabolic Genes"; Proceedings of the 6th Workshop on Algorithms in Bioinformatics (WABI), Lecture Notes in Computer Science (LNCS), Vol. 4175, September 2006, pp. 274-285.

 R. Y. Pinter, O. Rokhlenko, E. Yeger-Lotem, M. Ziv-Ukelson: "Alignment of Metabolic Pathways"; Bioinformatics, Vol. 21, No. 16 (August 2005), pp. 3401-3408.

 R. Y. Pinter, O. Rokhlenko, D. Tsur, and M. Ziv-Ukelson: "Approximate Labelled Subtree Homeomorphism"; Proceedings of the 15th Annual Symposium on Combinatorial Pattern Matching (CPM), Lecture Notes in Computer Science (LNCS), Vol. 3109, July 2004, pp. 59-73.

 Ron Y. Pinter and Oleg Rokhlenko: "New Methods for the Alignment of Complex Structures";  Currents in Computational Molecular Biology, pages 313-314, 2003.

Y. Wexler and O. Rokhlenko: "Benefits and hazards of self-adaptive crossover strategies"; In submission.

Tools:

 MetaPathwayHunter                                                                            a novel tool for the alignment of metabolic   pathways

Other:

My CV (pdf)