Eran Eden's Personal Home Page

Peer Reviewed Journal Publications

•      Naama Geva-Zatorsky, Irina Issaeva, Ariel Cohen, Erez Dekel, Tamar Danon, Lydia Cohen, Avi Mayo, Uri Alon and Eran Eden.

Using Bleach-Chase to Measure Protein Half Lives in Living Cells

Nature Protocols, 2012, (Accepted)

•      Eran Eden

Proteome Dynamics and the Fate of Individual Cancer Cells in Response to a Drug

Science 2012 pdf , Winning essay of the GE and Science Prize for Promising Young Life Scientists - All Other Countries category

•     Eran Eden^*, Naama Geva-Zatorsky^*, Irina Issaeva, Ariel Cohen, Erez Dekel, Tamar Danon, Lydia Cohen, Avi Mayo  and Uri Alon.

* Equal contributors

Proteome Half-Life Dynamics in Living Human Cells

Science, 2011. pdf

News & Views:

- Science 2011, pdf ,

- Nature Methods 2011, pdf

- Science Signaling, pdf

•       Elad Noor, Eran Eden, Ron milo and Uri Alon.

  Central Carbon Metabolism as a Minimal Biochemical Walk between Precursors for Biomass and Energy

Molecular Cell, 2010. pdf

•       Eran Eden*, Roy Navon*, Israel Steinfeld, Doron Lipson, and Zohar Yakhini.    

* Equal contributors

GOrilla: A Tool For Discovery And Visualization of Enriched GO Terms in Ranked Gene Lists

BMC Bioinformatics, 2009. Pdf, GOrilla server.

•      Milana Frenkel-Morgenstern, Ariel A. Cohen, Naama Geva-Zatorsky, Eran Eden, Jaime Prilusky, Irina Issaeva, Alex Sigal,

Cellina Cohen-Saidon, Yuvalal Liron, Lydia Cohen, Tamar Danon, Natalie Perzov, Uri Alon.

Dynamic Proteomics: a database for dynamics and localizations of endogenous fluorescently-tagged proteins in living human cells Export.

Nucleic Acid Research, 2009.

•      A. Cohen*, N. Geva-Zatorsky*, E. Eden*, M. Frenkel-Morgenstern, I. Issaeva, A. Sigal, R. Milo, C. Cohen-Saidon, Y. Liron, Z. Kam, L. Cohen, T.Danon, N. Perzov, U. Alon

        Dynamic Proteomics of Individual Cancer Cells in Response to a Drug

* Equal contributors

Science, 2008. Pdf

        News & Views:

- Science 21 Nov. 2008. Pdf

- Nature Reviews Cancer 9, 8-9 2008. Pdf

- Demo of our automated cancer cell video analysis software - PhenoTrack. For viewing, please download to your personal computer - Download

•       Eran Eden, Doron Lipson, Sivan Yogev and Zohar Yakhini

     Motif Discovery in Ranked Lists of DNA Sequences.

PLoS Computational Biology, 2007. Pdf, DRIM software.

•       Yeshayahu Schlesinger, Ravid Straussman, Ilana Keshet, Shlomit Farkash, Merav Hecht, Joseph Zimmerman, Eran Eden, Zohar Yakhini, Etti Ben-Shushan,

Benjamin E, Reubinoff, Yehudit Bergman, Itamar Simon and Howard Cedar.

Polycomb mediated histone H3(K27) methylation pre-marks genes for de-novo methylation in cancer.

Nature Genetics - 39, 232 - 236, 2006. Paper.

•       Eran Eden, Michael Rudzsky, Vera Brod, Dan Waisman, Haim Bitterman, Edmond Sabo and Ehud Rivlin.

 An Automated Method for Analysis of Blood Cell Flow Characteristics from In-vivo Video-Microscopic Studies.

 Transactions on Medical Imaging - 24, 1011- 1024,. 2005. Paper , Supplementary web page.

GOrilla: A Tool For Discovery And Visualization of Enriched GO Terms in Ranked Gene Lists

BMC Bioinformatics, 2009. Pdf, GOrilla server.

•       Eran Eden and Søren Brunak.

 Analysis and recognition of 5’ UTR intron splice sites in human pre-mRNA.

Nucleic Acid Research, Vol. 32, 1131-1142, 2004. Paper, NetUTR server

Academic teachings:

• Lecturer of Matlab & Data Analysis, Weizmann Institute of Science (2008-2009). Lecture slides.

• TA in Algorithms 1 (2006) at the Technion – Israel Institute of Technology.

• TA in the course Projects in Computational Biology at the Technion - Israel Institute of Technology (2006)

• TA in charge of the course Introduction to C (2005-2006) at the Technion - Israel Institute of Technology. Tutorial slides

Software / web applications:

• PhenoTrack - Software for automated cell tracking and phenotype identification in living human cells. For viewing a demo please download and save to your personal computer and play - Download

• DRIM - Web server for Motif discovery in ranked lists of DNA.

• GOrilla - Web server for GO Enrichment analysis in ranked lists of Human genes

• SimTree - Web server for computing similarity between RNA secondary structures.

• NetUTR - Web server for prediction of splice site in 5' UTRs

Mesothelioma Lawyer